PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g39570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 511aa    MW: 56184.8 Da    PI: 10.2047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g39570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0582104123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  Tp6g39570  82 FVCEICNKGFQRDQNLQLHRRGH 104
                89*******************88 PP

2zf-C2H214.40.00011159181123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k +  +s+ k H +t+
  Tp6g39570 159 FKCDKCSKKYAVQSDWKAHAKTC 181
                89******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.51E-881104No hitNo description
Gene3DG3DSA:3.30.160.601.7E-581104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01782104IPR015880Zinc finger, C2H2-like
PfamPF121718.2E-582104IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94982104IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM0035578124154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-5147180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.51E-8154179No hitNo description
SMARTSM0035599159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MQMIPGDPFS ISSSMGGFVH QEHHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG  60
TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSNKEVIK  120
KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKFK CDKCSKKYAV QSDWKAHAKT  180
CGTREYKCDC GTLFSRKDSF ITHRAFCDAL TEEGARMSSL SNNPVISTTT MTTNLNFGND  240
SHVMNNPNLP HGFVHRGVHH PDINAAISQF GLGFGHDLSA MHAQGLSEMV QMASAGNHHL  300
FPLSSSSSLP DFSGHHHNQQ FQIPTTSTNP NLTLSSSSTS QQTSASLPSL QQQHQTLKDS  360
SFSPLFSSSD NKQNKPLSPM SATALLQKAA QMGSTRSNST TTPSFFAGPT MTSSSSAASP  420
PPRSSSPRMI QQQLNNNFNT NVSRENHNLV PPTTSSGGND NPFQSNRSVL NPVQQMGLTR  480
DFLGVSNEHH PHQTGRRPFL PQELARFAPL G
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6214940.0AJ621494.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 3 (idz3 gene).
GenBankAJ6304930.0AJ630493.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g03150.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686540.10.0PREDICTED: zinc finger protein JACKDAW isoform X2
SwissprotQ700D20.0IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLM4CZA20.0M4CZA2_BRARP; Uncharacterized protein
STRINGBra009549.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.10.0C2H2-like zinc finger protein